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GeCCO
GeCCO (Genomic CNV Classification Objectively) is a bioinformatics tool for classifying copy number variants as either benign or pathogenic.Publication: Accurate Distinction of Pathogenic from Benign CNVs in Mental Retardation
Download page: GeCCO at sourceforge.net
More information: Jayne Hehir-Kwa

Screenshot of how the program looks like
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